Novel experimental setup for time-of-flight mass spectrometry ion detection in collisions of anionic species with neutral gas-phase molecular targets
© Oller et al. 2015
Received: 15 June 2015
Accepted: 4 August 2015
Published: 21 August 2015
We report a novel experimental setup for studying collision induced products resulting from the interaction of anionic beams with a neutral gas-phase molecular target. The precursor projectile was admitted into vacuum through a commercial pulsed valve, with the anionic beam produced in a hollow cathode discharge-induced plasma, and guided to the interaction region by a set of deflecting plates where it was made to interact with the target beam. Depending on the collision energy regime, negative and positive species can be formed in the collision region and ions were time-of-flight (TOF) mass-analysed. Here, we present data on O2 precursor projectile, where we show clear evidence of O– and O2 – formation from the hollow cathode source as well as preliminary results on the interaction of these anions with nitromethane, CH3NO2. The negative ions formed in such collisions were analysed using time-of-flight mass spectrometry. The five most dominant product anions were assigned to H–, O–, NO–, CNO– and CH3NO2 –.
The study of radiation interactions with key biological constituents at the molecular level, has shown an increasing interest in the last few years, in particular after the pioneering studies of Sanche and co-workers on the resonant formation of DNA strand breaks by low-energy electrons [1, 2]. Such level of interactions has generated in the international community an urgent need to explore the different underlying molecular mechanisms responsible for such modifications, because mutagenic and genotoxic effects have been identified to be closely related to the initial molecular alterations. A comprehensive description of these mechanisms may ultimately lead to the development of new strategies and protocols in cancer/radiation therapy.
New radiotherapy techniques based on ion beam irradiation and using nanoparticles as radiosensitizers, concentrate the energy deposition around reduced volumes where, abundant secondary species, e.g. electrons and radicals, are generated. These secondary species have been found to be more efficient in producing damage than the primary radiation, because they can trigger physicochemical processes which determine the radiation damage in terms of molecular structure alterations (e.g. bond breaking, ionisation and negative ion formation, just to mention a few). In this context, event by event Monte Carlo simulation codes  together with multiscale modelling procedures  have been recently developed in order to model the effect of the radiation in reduced volumes and its correlation with the observed damage. Improving the accuracy of these models requires a considerable amount of interaction data that must be obtained from experiments and theory. In particular, interaction probabilities for ionic and neutral radicals generated during the irradiation are scarce, and in most cases almost unknown. Many elementary collisional processes are not due to direct electron impact but rather depend upon electron transfer, either from neutral  or even anionic species . These conditions motivated the present work in which a novel experimental system has been developed to study the interaction of negative radical species with biological relevant molecular targets. The essential part of this setup is composed of a pulsed hollow cathode discharge source, where upon gas admission allows extracting negative species to form a collimated beam with selected energies, in the range (0-1000 eV), to interact with an effusive molecular target. Ionic species, either positive or negative, formed in the interaction region are time-of-flight (TOF) mass analysed, although in this contribution we focus our attention to anion formation only.
In the next section we present a description of the novel experimental set up, and in section 3 we discuss the preliminary set of results obtained with O2 feed gas discharge and negative ion formation with nitromethane, CH3NO2 molecules. Finally, in section 4, some concluding remarks from this investigation are summarized.
The anionic and neutral molecular beams interact within a collision region, where a pulsed electrostatic field of −600 V, 0-8 μs variable width, 80 ms duty-cycle and 1500 μs delayed from the anionic pulse beam, is applied between two parallel plates (BR1 in Fig. 1) at a mutual distance of 15 mm. Negative ions formed in the interaction region through the electron transfer process, are removed in a direction normal to the plane of the two crossing beams. The electric field pushes the resulting negative ions into a 1.12 m TOF mass spectrometer, where anions are mass analysed and detected in a microchannel plate (MCP1) working on single pulse count mode (Fig. 1). However, if no collision is performed (and so no extraction is applied), the anionic projectile beam can be probed by a microchannel plate (MCP2) placed 5 cm just above the plane normal to its initial main direction at 0.65 m from the hollow cathode source (Fig. 1). Here a negative voltage of – 700 V is applied to BR2 (see Fig. 1). As shown in Fig. 1(a), the negative ion signal is formed during a short period of time in the afterglow, once plasma generated species de-excited and secondary electron attachment processes are favourable. This MCP2 detector is also used to monitor the alignment of the primary anion beam. In both set of measurements, a high-resolution digital oscilloscope (Tektronix MSO 3034, 2.5GS/s) is used to perform data acquisition.
Additionally, the discharge intensity can be monitored through an optical detector (digital camera), placed just in the beam’s forward direction (Fig. 1). The interaction region is also equipped with a small electron gun to analyse the neutral molecular beam composition and perform electron impact ionization measurements if required.
The liquid sample of nitromethane, CH3NO2, was purchased from Sigma-Aldrich with a minimum purity of ≥ 96 % and degassed by a repeated freeze–pump–thaw cycle before admission to the collision chamber.
Results and discussion
Figure 3 shows the TOF mass spectra of the anions clearly formed in the hollow cathode discharge-induced plasma at –250 V, with O2 as the feed gas. In Fig. 3a), and at shorter flight times, the signal also contains contributions from electrons and discharge instability from the hollow cathode source, albeit not interfering at all with that from the anions. The figure shows also the pulse valve control signal to set the proper TOF scale. The anionic beam is comprised of O– and O2 – anions (see Fig. 3b), the latter yielding around 70 % of the former, and clearly visible from the weak background signal (~10 %). Although both neutral species show a rather modest electron affinity values, EA(O) = 1.439 eV and EA(O2) = 0.448 eV , they are stable enough within the collision time scale to perform electron transfer experiments yielding anionic species from a neutral target molecule.
In the collision process from the anionic projectile to the neutral target beam, the potential role of the neutral atom as a stabilizing agent (third body) post-electron transfer from the incident anion is of particular interest, when compared to similar experiments performed with O– although the latter at higher impact energies, i.e. 4 keV . While in the current experiments the collision energy of the projectile is well-above that used in neutral alkali atom–molecule collision experiments, comparisons with the potassium projectile [8, 10, 11], and also with electron attachment experiments , can shed some light on our understanding of such stabilization effects. Nonetheless the electron capture mechanism, electron transfer from the projectile to the molecule, results in a transient negative ion (TNI) formation, which can decay via electron auto-detachment or fragmentation of the precursor anion.
Figure 4 shows the time analysis of the anionic yields produced from the electron transfer in collisions of oxygen anions (O–/O2 –) to nitromethane molecules, CH3NO2, at 250 eV. In this figure we see the starting pulse that pushes the negative ions into the TOF normal to the plane of the two crossing beams, together with the projectile anionic signal from MCP2 (blue curve). Of relevance, the fact that this signal is suddenly attenuated when the negative extraction voltage is applied, meaning that this voltage is enough to deviate the primary beam. However, the projectile’s kinetic energy is high enough to avoid any focusing within the TOF tube, even at a moderate extraction voltage to be detected in the MCP1, i.e. these anions are certainly lost in collisions with the TOF tube and do not reach the MCP detector. Moreover, the lack of any O2 – signal means that the anionic pattern in Fig. 4 is due to negative ions from CH3NO2 only.
Recently, nitromethane anion formation has been comprehensively studied in the gas-phase by dissociative electron attachment (DEA)  and electron transfer in neutral alkali atom collisions . Nitromethane has a sufficiently large dipole moment, 3.46 D, above the critical value of ∼ 2.5D  to bind an extra electron in a stable dipole-bound state. In DEA experiments, the dominant fragment anion was NO2 − and no parent anion, CH3NO2 −, was detected. This is reasonable due to the small positive electron affinity of nitromethane (0.44 eV). In the present study, we observe that the major anionic fragments from the collision of O–/O2 – with nitromethane, are assigned to NO– and CNO–, with other minor contributions from anionic signals assigned to H–, O– and the parent anion CH3NO2 –. This is in contrast to previous O− collision experiments at 4 keV with nitromethane, where the parent anion CH3NO2 – was the dominant signal  and other less intense fragments assigned to NO2 − and H−. As a comparison, results obtained in neutral alkali atom collision experiments have shown that the main fragment was due to NO2 − but, in contrast to DEA experiments, parent anion CH3NO2 – formation was observed. From Fig. 4, NO and CNO anion formation seems reasonable due to their high electron affinity values, ~3.0 and 3.6 eV , respectively, whereas no clear evidence for NO2 – formation is observed. However, due to lack of proper mass (time) resolution, we note that the CNO– peak may accommodate a second structure which could be easily assigned to NO2 –. Such certainly needs to be properly explored in future investigations when mass resolution issues will be appropriately addressed.
Nitromethane’s stable dipole-bound anionic state, provides a doorway into valence states of the molecular parent anion [14, 15]. The dipole-bound molecular anion has a significantly different geometry from its neutral counterpart, where a symmetric bend of the oxygen atoms in the –NO2 group results in a tetrahedral shape . Similarly to both alkali atom collisions and Rydberg electron transfer experiments, nitromethane parent anion formation by negative ion impact is expected to proceed through a transition to a low vibrational state of a 2 B 1 anionic state , whereas this does not occur in free electron attachment interactions. Another rationale to support such parent anion formation relies on the interaction of the projectile electron donor and the molecular target, modifying therefore the relative position or shape of the potential surfaces, and thereby changing the dissociation pathways. Owing to the high dipole moment of nitromethane, the presence of O/O2 in the collision complex may be rationalised as a third body “forcing” the electron to remain in the dipole-bound state long enough for the molecule to adiabatically proceed into its anionic geometry, thereby allowing an intramolecular electron transfer into one of its valence orbitals (in the anionic geometry). This is in contrast with free electron interactions where, even if the electron is initially captured into a dipole-bound state, its lifetime is not long enough to compete with auto-detachment. For a comprehensive description of the lowest-lying anionic states of nitromethane that may be involved, see [6, 12] and references therein.
Nonetheless, we observe significant differences in the anionic yields of nitromethane against O– experiments at 4 keV , and these need to be proper explored in future work which is far beyond the context of this contribution.
We report a novel experimental setup for studying collision induced products resulting from the interaction of anionic beams with a neutral gas-phase molecular target. The precursor anionic beam projectile is produced in a hollow cathode discharge-induced plasma, guided to the interaction region by a set of deflecting plates and made to interact with a neutral target beam.
In this work we obtained TOF mass spectra of negative ions produced in the collision of an anion projectile (O–/O2 –) with neutral nitromethane molecules. The fragmentation pattern is significantly different from that obtained both in dissociative electron attachment and in alkali atom–molecule collision experiments. It is interesting to note that the absence, or even low yield, of NO2 −, lends credibility to the assumption that the stabilizing effect produced by the potassium cation in neutral alkali atom collisions [8, 17] stems from the electrostatic interaction between the potassium cation and the molecular TNI . This mechanism has also been reported with biological molecules elsewhere [5, 10, 11]. Future comprehensive and detailed work exploring these mechanisms in anion–molecule collisions may provide some answers regarding to the role of such electron transfer processes.
PLV acknowledges the Portuguese Foundation for Science and Technology (FCT-MEC) through SFRH/BSAB/105792/2014 during his sabbatical stay at CSIC, Madrid and the research grants PTDC/FIS-ATO/1832/2012 and UID/FIS/00068/2013. FFS acknowledges FCT-MEC through researcher grant IF-FCT IF/00380/2014. We also acknowledge the Spanish Ministerio de Economía y Competitividad (Project No. FIS 2012-31230). Some of this work forms part of the EU/ESF COST Actions CM1401 and CM1301, Our Astro-Chemical History and Chemistry for Electron-Induced Nanofabrication, respectively. LE-G and GG acknowledge the FP7-PEOPLE-2013-ITN research grant “Advanced Radiotherapy, Generated by Exploiting Nanoprocesses and Technologies (ARGENT)”.
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- Boudaïffa B, Cloutier P, Hunting D, Huels MA, Sanche L. Resonant formation of DNA strand breaks by low-energy (3 to 20 eV) electrons. Science. 2000;287:1658–60.View ArticleADSGoogle Scholar
- Sanche L. Beyond radical thinking. Nature. 2009;461:358–9.View ArticleADSGoogle Scholar
- Blanco F, Muñoz A, Almeida D, Ferreira da Silva F, Limão-Vieira P, Fuss MC, et al. Modelling low energy electron and positron tracks in biologically relevant media. Eur Phys J D. 2013;67:199.View ArticleADSGoogle Scholar
- Solov’yov A, Surdutovich E, Scifoni E, Mishustin I, Greiner W. Physics of ion beam cancer therapy: a multiscale approach. Phys Rev E. 2009;79:011909.View ArticleADSGoogle Scholar
- Almeida D, Ferreira da Silva F, García G, Limão-Vieira P. Selective bond cleavage in potassium collisions with pyrimidine bases of DNA. Phys Rev Lett. 2013;110:023201.View ArticleADSGoogle Scholar
- Almeida D, Antunes R, Martins G, Garcia G, McCullough RW, Eden S, et al. Mass spectrometry of anions and cations produced in 1-4 keV H-, O-, and OH- collisions with nitromethane, water, ethanol, and methanol. Int J Mass Spectrom. 2012;311:7–16.View ArticleGoogle Scholar
- Antunes R, Almeida D, Martins G, Mason NJ, Garcia G, Maneira MJP, et al. Negative ion formation in potassium-nitromethane collisions. Phys. Chem. Chem Phys. 2010;12:12513–9.Google Scholar
- NIST, NIST Chemistry WebBook, http://webbook.nist.gov.
- Ferreira da Silva F, Almeida D, Antunes R, Martins G, Nunes Y, Eden S, et al. Electron transfer processes in potassium collisions with 5-fluorouracil and 5-chlorouracil. Phys Chem Chem Phys. 2011;13:21621–9.View ArticleGoogle Scholar
- Almeida D, Antunes R, Martins G, Eden S, Garcia G, Ferreira da Silva F, et al. Electron transfer-induced fragmentation of thymine and uracil in atom–molecule collisions. Phys Chem Chem Phys. 2011;13:15657–65.View ArticleGoogle Scholar
- Alizadeh E, Ferreira Da Silva F, Zappa F, Mauracher A, Probst M, Denifl S, et al. Dissociative electron attachment to nitromethane. Int J Mass Spectrom. 2008;271:15–21.View ArticleGoogle Scholar
- Clary DC. Photodetachment of electrons from dipolar anions. J Phys Chem. 1998;92:3173–81.View ArticleGoogle Scholar
- Compton RN, Carman HS, Desfrancois C, Abdoul-Carmine H, Schermann JP, Hendricks JH, et al. On the binding of electrons to nitromethane: dipole and valence bound anions. J Chem Phys. 1996;105:3472–8.View ArticleADSGoogle Scholar
- Sommerfeld T. Coupling Between Dipole-bound and valence states: the nitromethane anion. Phys Chem Chem Phys. 2002;4:2511–6.View ArticleGoogle Scholar
- Gutsev GL, Bartlett RJ. A theoretical study of the valence- and dipole-bound states of the nitromethane anion. J Chem Phys. 1996;105:8785–92.View ArticleADSGoogle Scholar
- Walker IC, Fluendy MAD. Spectroscopy and dynamics of nitromethane (CH3NO2) and its anionic states. Int J Mass Spectrom. 2001;205:171–82.View ArticleGoogle Scholar